The Ensembl Variant Effect Predictor
نویسندگان
چکیده
منابع مشابه
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
SUMMARY A tool to predict the effect that newly discovered genomic variants have on known transcripts is indispensible in prioritizing and categorizing such variants. In Ensembl, a web-based tool (the SNP Effect Predictor) and API interface can now functionally annotate variants in all Ensembl and Ensembl Genomes supported species. AVAILABILITY The Ensembl SNP Effect Predictor can be accessed...
متن کاملThe Ensembl REST API: Ensembl Data for Any Language
MOTIVATION We present a Web service to access Ensembl data using Representational State Transfer (REST). The Ensembl REST server enables the easy retrieval of a wide range of Ensembl data by most programming languages, using standard formats such as JSON and FASTA while minimizing client work. We also introduce bindings to the popular Ensembl Variant Effect Predictor tool permitting large-scale...
متن کاملEnsembl Genomes: Extending Ensembl across the taxonomic space
Ensembl Genomes (http://www.ensemblgenomes.org) is a new portal offering integrated access to genome-scale data from non-vertebrate species of scientific interest, developed using the Ensembl genome annotation and visualisation platform. Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of verteb...
متن کاملEnsembl 2011
The Ensembl project (http://www.ensembl.org) seeks to enable genomic science by providing high quality, integrated annotation on chordate and selected eukaryotic genomes within a consistent and accessible infrastructure. All supported species include comprehensive, evidence-based gene annotations and a selected set of genomes includes additional data focused on variation, comparative, evolution...
متن کاملEnsembl 2013
The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat. Our resources include evidenced-based gene sets for all supported species; large-scale whole genome multiple species alignments across vertebrates and clade-specific alignments for eutherian mammals, primates, birds and fish; variati...
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ژورنال
عنوان ژورنال: Genome Biology
سال: 2016
ISSN: 1474-760X
DOI: 10.1186/s13059-016-0974-4